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Publications information icon

Protein-protein interactions improve multiple transcription factor binding site prediction

Laurila, Kirsti; Pukkila, Heidi; Yli-Harja, Olli; Lähdesmäki, Harri
-2009Publications information icon

Disentangling transcription factor binding site complexity

Peer-reviewed
Open access
DOI
10.1093/nar/gky683
Eggeling, Ralf
Nucleic Acids Research2018Publications information icon

Bifunctional avidin with covalently modifiable ligand binding site

Peer-reviewed
Open access
Leppiniemi Jenni; Määttä Juha A.E; Hammaren Henrik; Soikkeli Mikko; Laitaoja Mikko; Jänis Janne; Ku...
PLoS ONE2011Publications information icon

Role of Second Quinone Binding Site in Proton Pumping by Respiratory Complex I

Peer-reviewed
Open access
DOI
10.3389/fchem.2019.00221
Haapanen, Outi; Djurabekova, Amina; Sharma, Vivek
Frontiers in Chemistry2019Publications information icon

Development and structural analysis of adenosine site binding tankyrase inhibitors

Peer-reviewed
Open access
DOI
10.1016/j.bmcl.2015.12.018
Haikarainen, Teemu; Waaler, Jo; Ignatev, Alexander; Nkizinkiko, Yves; Venkannagari, Harikanth; Obaji...
Bioorganic and medicinal chemistry letters2016Publications information icon

Modification of the loops in the ligand-binding site turns avidin into a steroid-binding protein.

Peer-reviewed
Open access
Riihimaki Tiina A; Hiltunen Soili; Rangl Martina; Nordlund Henri R; Määttä Juha AE; Ebner Andreas; H...
Bmc biotechnology2011Publications information icon

Modeling binding specificities of transcription factor pairs with random forests

Peer-reviewed
Open access
DOI
10.1186/s12859-022-04734-7
Antikainen, Anni A.; Heinonen, Markus; Lähdesmäki, Harri
Bmc bioinformatics2022Publications information icon

Acetyl xylan esterase from Trichoderma reesei contains an active-site serine residue and a cellulose-binding domain

Peer-reviewed
DOI
10.1111/j.1432-1033.1996.0553p.x
Margolles-Clark, Emilio; Tenkanen, Maija; Söderlund, Hans; Penttilä, Merja
European Journal of Biochemistry1996Publications information icon

Potent mechanism-based sirtuin-2-selective inhibition by an in situ-generated occupant of the substrate-binding site, "selectivity pocket" and NAD+-binding site

Peer-reviewed
Open access
DOI
10.1039/C7SC02738A
Mellini Paolo, Itoh Yukihiro, Tsumoto Hiroki, Li Ying, Suzuki Miki, Tokuda Natsuko, Kakizawa Taeko, ...
Chemical science2017Publications information icon

Deciphering the binding site and mechanism of new methylene blue with serum albumins: A multispectroscopic and computational investigation

Peer-reviewed
Open access
DOI
10.1016/j.saa.2023.122900
Perumal Manivel; Parthiban Marimuthu; Malaichamy Ilanchelian
Spectrochimica Acta Part A: Molecular and Biomolecular Spectroscopy2023

Protein-protein interactions improve multiple transcription factor binding site prediction

2009

Disentangling transcription factor binding site complexity

Peer-reviewed
Open access
DOI
10.1093/nar/gky683
2018

Bifunctional avidin with covalently modifiable ligand binding site

Peer-reviewed
Open access
2011

Role of Second Quinone Binding Site in Proton Pumping by Respiratory Complex I

Peer-reviewed
Open access
DOI
10.3389/fchem.2019.00221
2019

Development and structural analysis of adenosine site binding tankyrase inhibitors

Peer-reviewed
Open access
DOI
10.1016/j.bmcl.2015.12.018
2016

Modification of the loops in the ligand-binding site turns avidin into a steroid-binding protein.

Peer-reviewed
Open access
2011

Modeling binding specificities of transcription factor pairs with random forests

Peer-reviewed
Open access
DOI
10.1186/s12859-022-04734-7
2022

Acetyl xylan esterase from Trichoderma reesei contains an active-site serine residue and a cellulose-binding domain

Peer-reviewed
DOI
10.1111/j.1432-1033.1996.0553p.x
1996

Potent mechanism-based sirtuin-2-selective inhibition by an in situ-generated occupant of the substrate-binding site, "selectivity pocket" and NAD+-binding site

Peer-reviewed
Open access
DOI
10.1039/C7SC02738A
2017

Deciphering the binding site and mechanism of new methylene blue with serum albumins: A multispectroscopic and computational investigation

Peer-reviewed
Open access
DOI
10.1016/j.saa.2023.122900
2023