Liver fat biomarkers study from the 'Identification of gut-derived factors responsible for exercise-induced reward, physical inactivity and obesity' project
Description
The study aimed at finding gut microbiota signatures and metabolite markers in plasma and feces related to high liver fat content in humans. Based on imaging, we divided study participants into low (<5%, LF, n=25) and high (>5%, HF, n=39) liver fat groups. Fecal (LF n=14, HF n=25) and plasma (LF n=11, HF n=7) metabolomes of subsets of participants were studied using liquid chromatography/high resolution mass spectrometry. The gut microbiota were analyzed using 16S rRNA gene sequencing. Additionally, blood clinical variables, body composition and diet were studied.
The list of metadata variables can be found below. They are categorized by the type of sample and/or analysis.
BLOOD CLINICAL VARIABLES & UNITS
alanine aminotransferase, ALT (U/L)
aspartate aminotransferase, AST (U/L)
gamma-glutamyltransferase, GGT(U/L)
total cholesterol (mmol/L)
high-density lipoprotein, HDL (mmol/L)
low-density lipoprotein, LDL (mmol/L)
triglycrides (mmol/L)
glucose (mmol/L)
insulin (iU/L)
HOMA-IR
BODY COMPOSITION VARIABLES & UNITS
Height (cm)
Weight (kg)
body mass index, BMI (kg/m2)
Waist circumference (cm)
blood pressure (BP) systolic (mm Hg)
blood pressure (BP) diastolic (mm Hg)
Liver fat %
GUT MICROBIOTA COMPOSITION
fastq files of the sequences
OUT counts per each sample
relative abundance per each sample
diversity measures (Shannon, Chao1, phylogenetic diversity, Bray Curtis distance)
METABOLITES
plasma metabolites & identification information
fecal metabolites & identification information
DIETARY INTAKES & UNITS (from 3 different days & average from 3 days)
Energy (kJ)
Energy (kcal)
Protein (g)
Carbohydrates (g)
Fat (g)
Alcohol
Coffee (dl/3 days) *
Fatty acids (g)
Monosaturated Fatty acids (g)
Polyunsaturated Fatty acids (g)
Sucrose (g)
Fiber, total (g)
Vitamin C (mg)
Thiamine (B1) (mg)
Vitamin E (mg)
Vitamin A (µg)
Vitamin D (µg)
Riboflavin (B2) (mg)
Vitamin K (mg)
Vitamin B6 (mg)
Folate (B9) (µg)
Sodium (mg)
Magnesium (mg)
Calcium (mg)
Potassium (mg)
Iron (mg)
Iodine (µg)
Phosphorus (mg)
Selenium (µg)
Zinc (mg)
Fatty acids, total (g)
Cholesterol (mg)
Fatty acids, trans (g)
Lactose (g)
Fiber, total amount (g)
Vitamin B12 (cobalamine) (µg)
Salt (mg)
Omega-6 Fatty acids (g)
Omega-3 Fatty acids (g).
Show moreYear of publication
2023
Authors
Hospital District of Helsinki and Uusimaa - Contributor
University of Eastern Finland - Contributor
University of Helsinki - Contributor
University of Jyväskylä - Contributor, Publisher
Terveystieteiden laitos
Pekkala, Satu - Rights holder, Creator
Liikuntatieteellinen tiedekunta
Hintikka, Jukka - Creator
Mäkinen, Elina - Creator
Unknown
Pietiläinen, Kirsi H. - Contributor, Creator
Hakkarainen, Antti - Creator
Juvonen, Risto - Creator
Keski-Rahkonen, Pekka - Creator
Kuula, Juho - Creator
Laukkanen, Jari A. - Creator
Lehtonen, Marko - Creator
O’Connell, Thomas - Creator
Other information
Fields of science
Forensic science and other medical sciences
Language
English
Open access
Restricted access