Bio-logger Ethogram Benchmark: A benchmark for computational analysis of animal behavior, using animal-borne tags

Description

This repository contains the datasets presented in our forthcoming work: B. Hoffman, M. Cusimano, V. Baglione, D. Canestrari, D. Chevallier, D. DeSantis, L. Jeantet, M. Ladds, T. Maekawa, V. Mata-Silva, V. Moreno-González, A. Pagano, E. Trapote, O. Vainio, A. Vehkaoja, K. Yoda, K. Zacarian, A. Friedlaender, and C. Rutz, "A benchmark for computational analysis of animal behavior, using animal-borne tags," 2023. It also contains the experiment results which are reported in the paper. Standardized code to implement, train, and evaluate models can be found at https://github.com/earthspecies/BEBE/. Please note the licenses in each dataset folder. Zip folders beginning with "formatted": These are the datasets we used to run the experiments reported in the benchmark paper. Zip folders beginning with "raw": These are the unprocessed datasets used in BEBE. Code to processing a these raw datasets into the format used by BEBE can be found at https://github.com/earthspecies/BEBE-datasets/. Zip folders beginning with "experiments": Results of the cross-validation experiments reported in the paper, as well as hyperparameter optimization and cross-validation runs. Confusion matrices for all experiments can also be found here.
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Year of publication

2023

Type of data

Authors

Antti Vehkaoja - Creator

Unknown organization

Ari Friedlaender - Creator

Benjamin Hoffman - Creator

Christian Rutz - Creator

Damien Chevallier - Creator

Daniela Canestrari - Creator

Dominic L. DeSantis - Creator

Eva Trapote - Creator

Katherine Zacarian - Creator

Ken Yoda - Creator

Lorène Jeantet - Creator

Maddie Cusimano - Creator

Monique A. Ladds - Creator

Outi Vainio - Creator

Takuya Maekawa - Creator

Vicente Mata-Silva - Creator

Vittorio Baglione - Creator

Víctor Moreno-Gonzalez - Creator

Zenodo - Publisher

Project

Other information

Fields of science

Medical biotechnology

Language

English

Open access

Open

License

Creative Commons Attribution 4.0 International (CC BY 4.0)

Keywords

Medical biotechnology

Subject headings

Temporal coverage

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