Combining StarDist and TrackMate example 1 - Breast cancer cell dataset

Description

Description: Contains a StarDist example training dataset, a test dataset, and the StarDist model generated using ZeroCostDL4Mic (see https://github.com/HenriquesLab/ZeroCostDL4Mic/wiki/Stardist) Training dataset: 72 Paired microscopy images (fluorescence) and corresponding masks Microscopy data type: Fluorescence microscopy (SiR-DNA) and masks obtained via manual segmentation (see https://github.com/HenriquesLab/ZeroCostDL4Mic/wiki/Stardist for details about the segmentation) Microscope: Spinning disk confocal microscope with a 20x 0.8 NA objective Cell type: DCIS.COM Lifeact-RFP cells File format: .tif (16-bit for fluorescence and 8 and 16-bit for the masks) Image size: 1024x1024 (Pixel size: 634 nm)
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Year of publication

2020

Type of data

Authors

Zenodo - Publisher

Guillaume Jacquemet Orcid -palvelun logo - Creator

Project

Other information

Fields of science

Biochemistry, cell and molecular biology

Language

Open access

Open

License

Creative Commons Attribution 4.0 International (CC BY 4.0)

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