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Authors
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Year

Pangenome-spanning epistasis and coselection analysis via de Bruijn graphs

Peer-reviewed
Open access
DOI
10.1101/gr.278485.123
Kuronen, Juri; Horsfield, Samuel T.; Pöntinen, Anna K.; Mallawaarachchi, Sudaraka; Arredondo-Alonso,...
Genome Research2024

Robust analysis of prokaryotic pangenome gene gain and loss rates with Panstripe

Peer-reviewed
Open access
DOI
10.1101/gr.277340.122
Tonkin-Hill, Gerry; Gladstone, Rebecca A.; Pöntinen, Anna K.; Arredondo-Alonso, Sergio; Bentley, Ste...
Genome Research2023

Integrated Pangenome Analysis and Pharmacophore Modeling Revealed Potential Novel Inhibitors against Enterobacter xiangfangensis

Peer-reviewed
Open access
DOI
10.3390/ijerph192214812
Almuhayawi, Mohammed S.; Al Jaouni, Soad K.; Selim, Samy; Alkhalifah, Dalal Hussien M.; Marc, Romina...
International Journal of Environmental Research and Public Health2022

A pangenome and pantranscriptome of hexaploid oat

Peer-reviewed
Open access
DOI
10.1038/s41586-025-09676-7
Avni, Raz; Kamal, Nadia; Bitz, Lidija; Jellen, Eric N.; Bekele, Wubishet A.; Angessa, Tefera T.; Auv...
Nature2026

Indexable Sequence Graphs : Exploiting Uniqueness in the Pangenome Era

Open access
Rizzo, Nicola
A series of the Department of Computer Science2025

pyseer:a comprehensive tool for microbial pangenome-wide association studies

Peer-reviewed
Open access
DOI
10.1093/bioinformatics/bty539
Lees, John A.; Galardini, Marco; Bentley, Stephen D.; Weiser, Jeffrey N.; Corander, Jukka
Bioinformatics2018

Pangenome and genomic taxonomy analyses of Leuconostoc gelidum and Leuconostoc gasicomitatum

Peer-reviewed
Open access
DOI
10.1186/s12864-022-09032-3
Johansson, Per; Säde, Elina; Hultman, Jenni; Auvinen, Petri; Björkroth, Johanna
BMC Genomics2022

Improved Prediction of Bacterial Genotype-Phenotype Associations Using Interpretable Pangenome-Spanning Regressions

Peer-reviewed
Open access
DOI
10.1128/mBio.01344-20
Lees, John A.; Mai, T. Tien; Galardini, Marco; Wheeler, Nicole E.; Horsfield, Samuel T.; Parkhill, J...
mBio2020

Analysis

Peer-reviewed
Laakso, Johanna; Sarhimaa, Anneli; Spiliopoulou-Åkermark, Sia; Toivanen, Reetta Johanna
Linguistic Diversity and Language Rights2016

Software Reliability Analysis in Probabilistic Risk Analysis

Peer-reviewed
DOI
10.1007/978-4-431-54610-8_32
Holmberg, Jan-Erik
Springer2014

Pangenome-spanning epistasis and coselection analysis via de Bruijn graphs

Peer-reviewed
Open access
DOI
10.1101/gr.278485.123
2024

Robust analysis of prokaryotic pangenome gene gain and loss rates with Panstripe

Peer-reviewed
Open access
DOI
10.1101/gr.277340.122
2023

Integrated Pangenome Analysis and Pharmacophore Modeling Revealed Potential Novel Inhibitors against Enterobacter xiangfangensis

Peer-reviewed
Open access
DOI
10.3390/ijerph192214812
2022

A pangenome and pantranscriptome of hexaploid oat

Peer-reviewed
Open access
DOI
10.1038/s41586-025-09676-7
2026

Indexable Sequence Graphs : Exploiting Uniqueness in the Pangenome Era

Open access
2025

pyseer:a comprehensive tool for microbial pangenome-wide association studies

Peer-reviewed
Open access
DOI
10.1093/bioinformatics/bty539
2018

Pangenome and genomic taxonomy analyses of Leuconostoc gelidum and Leuconostoc gasicomitatum

Peer-reviewed
Open access
DOI
10.1186/s12864-022-09032-3
2022

Improved Prediction of Bacterial Genotype-Phenotype Associations Using Interpretable Pangenome-Spanning Regressions

Peer-reviewed
Open access
DOI
10.1128/mBio.01344-20
2020

Analysis

Peer-reviewed
2016

Software Reliability Analysis in Probabilistic Risk Analysis

Peer-reviewed
DOI
10.1007/978-4-431-54610-8_32
2014