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Publication name
Authors
Publication channel
Year

Inferring Tree-Shaped Single-Cell Trajectories with Totem

Peer-reviewed
Open access
DOI
10.1007/978-1-0716-3886-6_9
Sousa, António GG; Smolander, Johannes; Junttila, Sini; Elo, Laura L.
Methods in molecular biology2024

Transcriptomics of intracranial aneurysms

Peer-reviewed
DOI
10.1016/B978-0-323-91810-7.00012-1
Chaudhry, Shafqat Rasul; Sajjad, Saba; Shafique, Sumaira; Hänggi, Daniel; Muhammad, Sajjad
Elsevier2022

Computational analyses of transcriptome and DNA methylation data

Open access
Malonzo, Maia
Aalto University2024

Guide for library design and bias correction for large-scale transcriptome studies using highly multiplexed RNAseq methods

Peer-reviewed
Open access
DOI
10.1186/s12859-019-3017-9
Katayama, Shintaro; Skoog, Tiina; Söderhäll, Cilla; Einarsdottir, Elisabet; Krjutskov, Kaarel; Kere,...
BMC Bioinformatics2019

Endometrial receptivity revisited:endometrial transcriptome adjusted for tissue cellular heterogeneity

Peer-reviewed
DOI
10.1093/humrep/dey301
Suhorutshenko, Marina; Kukushkina, Viktorija; Velthut-Meikas, Agne; Altmäe, Signe; Peters, Maire; Mä...
Human reproduction2018

Functional profiling of the endometrium transcriptome during preimplantation development in Finnsheep, Texel and their F1 crosses

Peer-reviewed
Open access
DOI
10.23986/afsci.90523
Pokharel, Kisun; Peippo, Jaana; Li, Meng-Hua; Kantanen, Juha
Agricultural and food science2020

The Atlantic salmon whole blood transcriptome and how it relates to major locus maturation genotypes and other tissues

Peer-reviewed
Open access
DOI
10.1016/j.margen.2020.100809
Andrew, Samuel C.; Primmer, Craig R.; Debes, Paul V.; Erkinaro, Jaakko; Verta, Jukka-Pekka
Marine genomics2021

Composition of the whole transcriptome in the human plasma: Cellular source and modification by aging

Peer-reviewed
DOI
10.1016/j.exger.2020.111119
Nevalainen, Tapio;Autio, Arttu;Autio, Arttu;Puhka, Maija;Jylhä, Marja;Hurme, Mikko
Experimental gerontology2020

TrAnnoScope : A Modular Snakemake Pipeline for Full-Length Transcriptome Analysis and Functional Annotation

Peer-reviewed
Open access
DOI
10.3390/genes15121547
Pektas, Aysevil; Panitz, Frank; Thomsen, Bo
Genes2024

The Conjugation of Antibodies for the Simultaneous Detection of Surface Proteins and Transcriptome Analysis at a Single-Cell Level

Peer-reviewed
Open access
DOI
10.1007/978-1-0716-0802-9_3
Kleino, Iivari; Kekäläinen, Eliisa; Lönnberg, Tapio
Methods in molecular biology2020

Inferring Tree-Shaped Single-Cell Trajectories with Totem

Peer-reviewed
Open access
DOI
10.1007/978-1-0716-3886-6_9
2024

Transcriptomics of intracranial aneurysms

Peer-reviewed
DOI
10.1016/B978-0-323-91810-7.00012-1
2022

Computational analyses of transcriptome and DNA methylation data

Open access
2024

Guide for library design and bias correction for large-scale transcriptome studies using highly multiplexed RNAseq methods

Peer-reviewed
Open access
DOI
10.1186/s12859-019-3017-9
2019

Endometrial receptivity revisited:endometrial transcriptome adjusted for tissue cellular heterogeneity

Peer-reviewed
DOI
10.1093/humrep/dey301
2018

Functional profiling of the endometrium transcriptome during preimplantation development in Finnsheep, Texel and their F1 crosses

Peer-reviewed
Open access
DOI
10.23986/afsci.90523
2020

The Atlantic salmon whole blood transcriptome and how it relates to major locus maturation genotypes and other tissues

Peer-reviewed
Open access
DOI
10.1016/j.margen.2020.100809
2021

Composition of the whole transcriptome in the human plasma: Cellular source and modification by aging

Peer-reviewed
DOI
10.1016/j.exger.2020.111119
2020

TrAnnoScope : A Modular Snakemake Pipeline for Full-Length Transcriptome Analysis and Functional Annotation

Peer-reviewed
Open access
DOI
10.3390/genes15121547
2024

The Conjugation of Antibodies for the Simultaneous Detection of Surface Proteins and Transcriptome Analysis at a Single-Cell Level

Peer-reviewed
Open access
DOI
10.1007/978-1-0716-0802-9_3
2020