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Year

Phosphoproteomics to Characterize Host Response During Influenza A Virus Infection of Human Macrophages

Peer-reviewed
Open access
DOI
10.1074/mcp.M116.057984
Soderholm, Sandra; Kainov, Denis E.; Ohman, Tiina; Denisova, Oxana V.; Schepens, Bert; Kulesskiy, Ev...
Molecular and cellular proteomics2016

Quantitative Site-Specific Phosphoproteomics of Trichoderma reesei Signaling Pathways upon Induction of Hydrolytic Enzyme Production

Peer-reviewed
DOI
10.1021/acs.jproteome.5b00796
Nguyen, Elizabeth V.; Imanishi, Susumu Y.; Haapaniemi, Pekka; Yadav, Avinash; Saloheimo, Markku; Cor...
Journal of proteome research2016

Phosphonormalizer: an R package for normalization of MS-based label-free phosphoproteomics

Peer-reviewed
Open access
DOI
10.1093/bioinformatics/btx573
Sohrab Saraei, Tomi Suomi, Otto Kauko, Laura L. Elo
Bioinformatics2018

Label-free quantitative phosphoproteomics with novel pairwise abundance normalization reveals synergistic RAS and CIP2A signaling

Peer-reviewed
Kauko O; Laajala TD; Jumppanen M; Hintsanen P; Suni V; Haapaniemi P; Corthals G; Aittokallio T; West...
Scientific Reports2015

Label-free quantitative phosphoproteomics with novel pairwise abundance normalization reveals synergistic RAS and CIP2A signaling

Peer-reviewed
Open access
DOI
10.1038/srep13099
Kauko, Otto; Laajala, Teemu Daniel; Jumppanen, Mikael; Hintsanen, Petteri; Suni, Veronika; Haapaniem...
scientific reports2015

Evaluation of the relevance and impact of kinase dysfunction in neurological disorders - through proteomics and phosphoproteomics bioinformatics

Open access
Hong Ye
University of Turku2023

Integrative phosphoproteomics defines two biologically distinct groups of KMT2A rearranged acute myeloid leukaemia with different drug response phenotypes

Peer-reviewed
Open access
DOI
10.1038/s41392-022-01288-1
Casado-Izquierdo, Pedro; Rio-Machin, Ana; Miettinen, Juho J,; Bewicke-Copley, Findlay; Rouault-Pierr...
Signal transduction and targeted therapy2023

Insights into Chemoselectivity Principles in Metal Oxide Affinity Chromatography Using Tailored Nanocast Metal Oxide Microspheres and Mass Spectrometry-Based Phosphoproteomics

Peer-reviewed
DOI
10.1039/C7AN00570A
Alexander Leitner; Motolani Sakeye; Christian Zimmerli; Jan-Henrik Smått
Analyst2017

Phosphoproteomics Combined with Quantitative 14-3-3-affinity Capture Identifies SIRT1 and RAI as Novel Regulators of Cytosolic Double-stranded RNA Recognition Pathway

Peer-reviewed
DOI
10.1074/mcp.M114.038968
Ohman, Tiina; Soderholm, Sandra; Hintsanen, Petteri; Valimaki, Elina; Lietzen, Niina; MacKintosh, Ca...
Molecular & Cellular Proteomics2014

Impact of diet-induced obesity on the mouse brain phosphoproteome

Peer-reviewed
DOI
10.1016/j.jnutbio.2018.04.015
Valentina Siino, Antonella Amato, Francesca Di Salvo, Gaetano Felice Caldara, Marcello Filogamo, Pet...
Journal of nutritional biochemistry2018

Phosphoproteomics to Characterize Host Response During Influenza A Virus Infection of Human Macrophages

Peer-reviewed
Open access
DOI
10.1074/mcp.M116.057984
2016

Quantitative Site-Specific Phosphoproteomics of Trichoderma reesei Signaling Pathways upon Induction of Hydrolytic Enzyme Production

Peer-reviewed
DOI
10.1021/acs.jproteome.5b00796
2016

Phosphonormalizer: an R package for normalization of MS-based label-free phosphoproteomics

Peer-reviewed
Open access
DOI
10.1093/bioinformatics/btx573
2018

Label-free quantitative phosphoproteomics with novel pairwise abundance normalization reveals synergistic RAS and CIP2A signaling

Peer-reviewed
2015

Label-free quantitative phosphoproteomics with novel pairwise abundance normalization reveals synergistic RAS and CIP2A signaling

Peer-reviewed
Open access
DOI
10.1038/srep13099
2015

Evaluation of the relevance and impact of kinase dysfunction in neurological disorders - through proteomics and phosphoproteomics bioinformatics

Open access
2023

Integrative phosphoproteomics defines two biologically distinct groups of KMT2A rearranged acute myeloid leukaemia with different drug response phenotypes

Peer-reviewed
Open access
DOI
10.1038/s41392-022-01288-1
2023

Insights into Chemoselectivity Principles in Metal Oxide Affinity Chromatography Using Tailored Nanocast Metal Oxide Microspheres and Mass Spectrometry-Based Phosphoproteomics

Peer-reviewed
DOI
10.1039/C7AN00570A
2017

Phosphoproteomics Combined with Quantitative 14-3-3-affinity Capture Identifies SIRT1 and RAI as Novel Regulators of Cytosolic Double-stranded RNA Recognition Pathway

Peer-reviewed
DOI
10.1074/mcp.M114.038968
2014

Impact of diet-induced obesity on the mouse brain phosphoproteome

Peer-reviewed
DOI
10.1016/j.jnutbio.2018.04.015
2018