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Year

TrAnnoScope : A Modular Snakemake Pipeline for Full-Length Transcriptome Analysis and Functional Annotation

Peer-reviewed
Open access
DOI
10.3390/genes15121547
Pektas, Aysevil; Panitz, Frank; Thomsen, Bo
Genes2024

The Conjugation of Antibodies for the Simultaneous Detection of Surface Proteins and Transcriptome Analysis at a Single-Cell Level

Peer-reviewed
Open access
DOI
10.1007/978-1-0716-0802-9_3
Kleino, Iivari; Kekäläinen, Eliisa; Lönnberg, Tapio
Methods in molecular biology2020

Probabilistic analysis of the human transcriptome with side information

Open access
Lahti, Leo
Aalto-yliopiston teknillinen korkeakoulu2010

Computational analyses of transcriptome and DNA methylation data

Open access
Malonzo, Maia
Aalto University2024

Single-cell transcriptome analysis of endometrial tissue

Peer-reviewed
Open access
DOI
10.1093/humrep/dew008
Krjutskov, K.; Katayama, S.; Saare, M.; Vera-Rodriguez, M.; Lubenets, D.; Samuel, K.; Laisk-Podar, T...
Human reproduction2016

Integrative transcriptome analysis deciphers mechanisms of nickel contact dermatitis

Peer-reviewed
Open access
DOI
10.1111/all.14519
Wisgrill, Lukas; Werner, Paulina; Jalonen, Erja; Berger, Angelika; Lauerma, Antti; Alenius, Harri; F...
Allergy2021

Transcriptome-Wide Analysis Identifies Novel Associations With Blood Pressure

Peer-reviewed
Open access
DOI
10.1161/HYPERTENSIONAHA.117.09458
Zeller, Tanja;Schurmann, Claudia;Schramm, Katharina;Mueller, Christian;Kwon, Soonil;Wild, Philipp S....
HYPERTENSION2017

Comparative transcriptome analysis of the metal hyperaccumulator Noccaea caerulescens

Peer-reviewed
Open access
DOI
10.3389/fpls.2014.00213
Halimaa Pauliina, Blande Daniel, Aarts Mark G M, Tuomainen Marjo, Tervahauta Arja, Kärenlampi Sirpa
Frontiers in Plant Science2014

Transcriptome Analysis Reveals Signature of Adaptation to Landscape Fragmentation

Peer-reviewed
Open access
DOI
10.1371/journal.pone.0101467
Somervuo, Panu; Kvist, Jouni; Ikonen, Suvi; Auvinen, Petri; Paulin, Lars; Koskinen, Patrik; Holm, Li...
PLoS ONE2014

Whole transcriptome analysis reveals non-coding RNA's competing endogenous gene pairs as novel form of motifs in serous ovarian cancer

Peer-reviewed
Open access
DOI
10.1016/j.compbiomed.2022.105881
Li, Haili; Zheng, Xubin; Gao, Jing; Leung, Kwong Sak; Wong, Man Hon; Yang, Shu; Liu, Yakun; Dong, Mi...
Computers in biology and medicine2022

TrAnnoScope : A Modular Snakemake Pipeline for Full-Length Transcriptome Analysis and Functional Annotation

Peer-reviewed
Open access
DOI
10.3390/genes15121547
2024

The Conjugation of Antibodies for the Simultaneous Detection of Surface Proteins and Transcriptome Analysis at a Single-Cell Level

Peer-reviewed
Open access
DOI
10.1007/978-1-0716-0802-9_3
2020

Probabilistic analysis of the human transcriptome with side information

Open access
2010

Computational analyses of transcriptome and DNA methylation data

Open access
2024

Single-cell transcriptome analysis of endometrial tissue

Peer-reviewed
Open access
DOI
10.1093/humrep/dew008
2016

Integrative transcriptome analysis deciphers mechanisms of nickel contact dermatitis

Peer-reviewed
Open access
DOI
10.1111/all.14519
2021

Transcriptome-Wide Analysis Identifies Novel Associations With Blood Pressure

Peer-reviewed
Open access
DOI
10.1161/HYPERTENSIONAHA.117.09458
2017

Comparative transcriptome analysis of the metal hyperaccumulator Noccaea caerulescens

Peer-reviewed
Open access
DOI
10.3389/fpls.2014.00213
2014

Transcriptome Analysis Reveals Signature of Adaptation to Landscape Fragmentation

Peer-reviewed
Open access
DOI
10.1371/journal.pone.0101467
2014

Whole transcriptome analysis reveals non-coding RNA's competing endogenous gene pairs as novel form of motifs in serous ovarian cancer

Peer-reviewed
Open access
DOI
10.1016/j.compbiomed.2022.105881
2022