Dataset for Accurate non-invasive quantification of astaxanthin content using hyperspectral images and machine learning

Dataset for Accurate non-invasive quantification of astaxanthin content using hyperspectral images and machine learning

Description

The dataset contains spectral data of cell suspensions of the microalgae Haematococcus pluvialis under no-stress and stress conditions. Spectral data was obtained with a hyperspectral imager (reflectance) and a spectrophotometer coupled with an integrating sphere (absorbance). Together with the raw data files, this dataset contains the Jupyter Notebook (PYTHON language) scripts to process the data and analysed it. Among the analysis, linear models and a convolutional neural network (CNN) are developed for the spectral data. The objective of this dataset was to develop a CNN able to accurately quantify astaxanthin content per dry weight from hyperspectral images (HSI). The CNN prediction accuracy was compared to linear models using the spectrophotometer couples with the integrating sphere. In addition to the scripts, this dataset contains all data files generated in those scripts.
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Year of publication

2025

Authors

Bio- ja ympäristötieteiden laitos

Pulkkinen, Katja Orcid -palvelun logo - Creator

Timilsina, Hemanta - Creator

Yli-Tuomola, Aliisa - Creator

Informaatioteknologian tiedekunta

Calderini, Marco Orcid -palvelun logo - Creator, Rights holder

Pääkkönen, Salli Orcid -palvelun logo - Creator

Pölönen, Ilkka Orcid -palvelun logo - Creator

Salmi, Pauliina Orcid -palvelun logo - Creator

Other information

Fields of science

Computer and information sciences

Language

English

Open access

Embargo

License

Other

Keywords

machine learning, monitoring, Hyperspectral imaging, koneoppiminen, astaxanthin, Haematococcus pluvialis, levät, monitorointi, pigmentit (värijauheet), pigments

Subject headings

algae
Dataset for Accurate non-invasive quantification of astaxanthin content using hyperspectral images and machine learning - Research.fi