fOPT tools

fOPT tools

Description

This package is written for the iterative reconstruction and visualisation of fluorescent optical projection tomography data. It relies on MATLAB 64-bit R2016b or later, and requires the Image Processing Toolbox and the Parallel Computing Toolbox. The experimental data were obtained from a zebrafish embryo that was two days post fertilization and expressed eGFP in endothelium. Both fluorescence and bright field measurements of the head and the tail of the same sample are available. The data was acquired using an in-house OPT setup. The videos attached are examples of reconstructions. The published data have not been corrected for centre of rotation error, while the videos show reconstructions where this has been done manually. See the readme file in fopt-tools.zip for more information.
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Year of publication

2018

Authors

Olli Koskela - Creator

Unknown organization

Toni Montonen - Creator

Ville Koljonen - Creator

Zenodo - Publisher

Other information

Fields of science

Medical biotechnology

Language

English

Open access

Open

License

Other

Keywords

Medical biotechnology
fOPT tools - Research.fi