Scots pine genotypes from Finland, code and supplementary data for the paper: "Does the seed fall far from the tree? Weak fine-scale genetic structure in a continuous Scots pine population"

Scots pine genotypes from Finland, code and supplementary data for the paper: "Does the seed fall far from the tree? Weak fine-scale genetic structure in a continuous Scots pine population"

Description

Supplementary data for the manuscript: "Does the seed fall far from the tree? Weak fine-scale genetic structure in a continuous Scots pine population" Files included in the dataset: 1. & 2. "Genotypes.ped" & Genotypes.map": PLINK genotype file in .ped format and SNP position file in .map format including filtered genotype data for 469 individuals and 65 498 SNPs used for principal component analysis (PCA) and estimating pairwise relatedness. 3. "MAF_01_pine_426inds_23623_loci.raw" : Plink Genotype file in .raw format including 23 623 SNPs for 426 unrelated Scots pines used in the rare allele analyses. 4. "Locations_population.txt" : Location information for 469 Scots pines in Punkaharju research area. The sampling site ("Ranta-Halola" or "Mäkrä") is given. Command files included: 5. "Spatial_R_commands_fighsare.R": Main R commands of the PCA, FST and Mantel analyses. 6. "GCTA_commands_figshare.txt": Main GCTA commands for estimating relatedness and inbreeding. Supplementary data file: 7. "Niskanen_etal_2024_Supplements.pdf": Includes Supplementary figures S1-S6 and tables S1-S2.
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Year of publication

2024

Authors

Katri Kärkkäinen - Creator

Sonja Kujala Orcid -palvelun logo - Creator

Maatalous-metsätieteellinen tiedekunta

Tanja Pyhäjärvi Orcid -palvelun logo - Creator

Ekologian ja genetiikan tutkimusyksikkö

Alina Niskanen Orcid -palvelun logo - Creator

Outi Savolainen - Creator

figshare - Publisher

Other information

Fields of science

Ecology, evolutionary biology; Genetics, developmental biology, physiology

Language

English

Open access

Open

License

Creative Commons Attribution 4.0 International (CC BY 4.0)

Keywords

Scots pine, Forest genetics, SNP, Spatial genetics

Subject headings

boreal forests, population genetics, spatial analysis