Datasets for the paper "Advancing Scanning Probe Microscopy Simulations: A Decade of Development in Probe-Particle Models"

Datasets for the paper "Advancing Scanning Probe Microscopy Simulations: A Decade of Development in Probe-Particle Models"

Description

Input data for probe-particle (PP) atomic force microscopy (AFM), scanning tunnelling microscopy (STM), and Kelvin probe microscopy (KPFM) simulations in the paper "Advancing Scanning Probe Microscopy Simulations: A Decade of Development in Probe-Particle Models". Included files: - CO_tip_densities.tar.gz: the total and delta electron densities for a CO tip. - hartree-density.tar.gz: the hartree potential (LOCPOT.xsf), electron density (CHGCAR.xsf), and xyz geometry with point charges (mol.xyz) for 6 example molecules: C60 fullerene, formic acid dimer (FAD), 4-(4-(2,3,4,5,6- pentafluorophenylethynyl)-2,3,5,6- tetrafluorophenylethynyl) phenylethynylbenzene (FFPB), pentacene, phtalocyanine, perylene carboxylic anhydride (PTCDA). - dft-afm.tar.gz: DFT-calculated forces for the CO-tip for all of the example molecules. Saved as numpy npz files that containt the force arrays under the key 'force' and the physical extent of the region in Ångstöms under the key 'scan_window'. - Fig_4_STM_data.tar.gz: Hartree potential (cube_001_hartree_potential.cube) and eigenvectors (KS_eigenvectors.band_1.kpt_1.out) of PTCDA for PP-STM simulations. - KPFM_Hartree.tar.gz: Hartree potentials of FFPB with a bias voltage for KPFM simulations.
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Year of publication

2024

Authors

Department of Applied Physics

Aliaksandr Yakutovich - Creator

Martin Ondráček - Creator

Niko Oinonen Orcid -palvelun logo - Creator

Ondřej Krejčí Orcid -palvelun logo - Creator

Institute of Physics of the Czech Academy of Sciences - Contributor

Swiss Federal Laboratories for Materials Science and Technology - Contributor

Zenodo - Publisher

Other information

Fields of science

Physical sciences; Nanotechnology

Open access

Open

License

Creative Commons Attribution 4.0 International (CC BY 4.0)