fMRI data acquired during spontaneous behavior in head-fixed rats with MB-SWIFT sequence

fMRI data acquired during spontaneous behavior in head-fixed rats with MB-SWIFT sequence

Description

This data package includes data obtained from 10 rats, and each subject has their own folder. Each folder contains sub-folders of 1-3 task-free resting-state scans (BL0, BL1, and/or BL2). Additionally, the "Odor" folder includes the banana odor stimuli data. Each sub-folder contains the reconstructed and unprocessed fMRI file (swift.nii), unprocessed T2-weighted anatomical image (T2.nii), and fully processed fMRI data (s_pr_sc_c_rrr_swift.nii). The preprocessing included motion correction, co-registration, removal of volumes with clear motion and subsequent interpolation, regression of non-biological signals, and spatial smoothing. Two scripts are also provided: makefile and mot_corr.sh - where the makefile script runs the preprosessing steps from swift.nii to smoothed and co-registered swift dataset apart from motion correction. The motion correction step is performed by the mot_corr.sh shell script.
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Year of publication

2021

Authors

A.I. Virtanen -instituutti / Neurobiologia

Jaakko Paasonen - Publisher, Creator

Other information

Fields of science

Neurosciences

Language

English

Open access

Open

License

Creative Commons Attribution NonCommercial NoDerivatives 4.0 International (CC BY NC ND 4.0)

Keywords

fMRI, rat, awake, behavior, animal behaviour
fMRI data acquired during spontaneous behavior in head-fixed rats with MB-SWIFT sequence - Research.fi