MD simulation trajectory and related files for POPC bilayer with 30 mol% of protonated pazePC (Berger, Gromacs 4.5.)
Description
Simulation trajectory and related files for POPC bilayer with 30mol% of pazePC in deprotonated form used in "Acyl chain disorder and azelaoyl orientation in lipid membranes containing oxidised lipids" by T. M. Ferreira, et al., to be submitted.
The simulation with deprotonated pazePC from the same publication available at http://dx.doi.org/10.5281/zenodo.44622
90 POPC, 38 pazePC, 7250 water and 38 potassium molecules. Simulation time 120ns.
Force field for POPC is based on Berger model and force field for pazePC is modified from H. Khandelia and O. G. Mouritsen, Biophysical Journal, 2009, 96(7), 2734 – 2743, http://dx.doi.org/10.1016/j.bpj.2009.01.007.
Show moreYear of publication
2016
Authors
Department of Neuroscience and Biomedical Engineering
Samuli Ollila - Creator
Zenodo - Publisher
Other information
Fields of science
Biochemistry, cell and molecular biology
Open access
Open
License
Creative Commons CC0 1.0 Universal (CC0 1.0) Public Domain Dedication