MD simulation trajectory and related files for POPC bilayer with 30 mol% of protonated pazePC (Berger, Gromacs 4.5.)

MD simulation trajectory and related files for POPC bilayer with 30 mol% of protonated pazePC (Berger, Gromacs 4.5.)

Description

Simulation trajectory and related files for POPC bilayer with 30mol% of pazePC in deprotonated form used in "Acyl chain disorder and azelaoyl orientation in lipid membranes containing oxidised lipids" by T. M. Ferreira, et al., to be submitted. The simulation with deprotonated pazePC from the same publication available at http://dx.doi.org/10.5281/zenodo.44622 90 POPC, 38 pazePC, 7250 water and 38 potassium molecules. Simulation time 120ns. Force field for POPC is based on Berger model and force field for pazePC is modified from H. Khandelia and O. G. Mouritsen, Biophysical Journal, 2009, 96(7), 2734 – 2743, http://dx.doi.org/10.1016/j.bpj.2009.01.007.
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Year of publication

2016

Authors

Department of Neuroscience and Biomedical Engineering

Samuli Ollila - Creator

Zenodo - Publisher

Other information

Fields of science

Biochemistry, cell and molecular biology

Open access

Open

License

Creative Commons CC0 1.0 Universal (CC0 1.0) Public Domain Dedication

MD simulation trajectory and related files for POPC bilayer with 30 mol% of protonated pazePC (Berger, Gromacs 4.5.) - Research.fi