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A library of reporters of the global regulators of gene expression of Escherichia coli

Open access
DOI
10.5061/dryad.b2rbnzsm8
Suchintak Dash2024
Open access
DOI
10.5061/dryad.b2rbnzsm8

The transcription factor network of E. coli steers global responses to shifts in RNAP concentration

Open access
DOI
10.5061/dryad.wh70rxwnp
Antti Häkkinen, Olli-Pekka Smolander, Petri Auvinen, Samuel M.D. Oliveira, Abhishekh Gupta, Andre Sanches Ribeiro, Bilena Lima De Brito Almeida, Cristina Santos Dias Palma, Eric Dufour, Howard Jacobs, Ines Calado Baptista, Jason Lloyd-Price, Juha Kesseli, Matti Nykter, Mohamed Mohamed Bahrudeen, Suchintak Dash, Vatsala Chauhan, Vinodh Kandavalli2022
Open access
DOI
10.5061/dryad.wh70rxwnp

Modeling binding specificities of transcription factor pairs with random forests

Open access
DOI
10.6084/m9.figshare.c.6031779.v1
Anni A. Antikainen, Harri Lähdesmäki, Markus Heinonen2022
Open access
DOI
10.6084/m9.figshare.c.6031779.v1

Additional file 2 of Modeling binding specificities of transcription factor pairs with random forests

Open access
DOI
10.6084/m9.figshare.20003421
Anni A. Antikainen, Harri Lähdesmäki, Markus Heinonen2022
Open access
DOI
10.6084/m9.figshare.20003421

Alteration of DNA supercoiling serves as a trigger of short-term cold shock repressed genes of E. coli

Open access
DOI
10.5061/dryad.pvmcvdnnm
Andre Sanches Ribeiro, Bilena Lima de Brito Almeida, Cristina Santos Dias Palma, Ines Calado Baptista, Mohamed Bahrudeen, Rahul Jagadeesan, Suchintak Dash, Vatsala Chauhan2022
Open access
DOI
10.5061/dryad.pvmcvdnnm

Analytical kinetic model of native tandem promoters in E. coli

Open access
DOI
10.5061/dryad.bnzs7h4bs
Bilena L.B. Almeida, Cristina S.D. Palma, Ines S.C. Baptista, Mohamed N.M. Bahrudeen, Vinodh Kandavalli, Andre S. Ribeiro, Suchintak Dash, Vatsala Chauhan2022
Open access
DOI
10.5061/dryad.bnzs7h4bs

Single cell characterization of B-lymphoid differentiation and leukemic cell states during chemotherapy in ETV6-RUNX1-positive pediatric leukemia identifies drug-targetable transcription factor activities

Open access
DOI
10.6084/m9.figshare.c.5214813.v1
Aleksi Kokko, Alena Malyukova, Juha Mehtonen, Mari Lahnalampi, Maria Bouvy-Liivrand, Merja Heinäniemi, Olle Sangfelt, Riikka Lund, Riina Kaukonen, Tapio Lönnberg, Artturi Mäkinen, Laura Oksa, Olli Lohi, Pekka Ruusuvuori, Petri Mäkinen, Saara Laukkanen, Samuli Rounioja, Susanna Teppo2020
Open access
DOI
10.6084/m9.figshare.c.5214813.v1

Analyzing Th17 cell differentiation dynamics using a novel integrative modeling framework for time-course RNA sequencing data

Open access
DOI
10.6084/m9.figshare.c.3612158.v1
Henrik Mannerström2015
Open access
DOI
10.6084/m9.figshare.c.3612158.v1

A library of reporters of the global regulators of gene expression of Escherichia coli

Open access
DOI
10.5061/dryad.b2rbnzsm8
2024

The transcription factor network of E. coli steers global responses to shifts in RNAP concentration

Open access
DOI
10.5061/dryad.wh70rxwnp
2022

Modeling binding specificities of transcription factor pairs with random forests

Open access
DOI
10.6084/m9.figshare.c.6031779.v1
2022

Additional file 2 of Modeling binding specificities of transcription factor pairs with random forests

Open access
DOI
10.6084/m9.figshare.20003421
2022

Alteration of DNA supercoiling serves as a trigger of short-term cold shock repressed genes of E. coli

Open access
DOI
10.5061/dryad.pvmcvdnnm
2022

Analytical kinetic model of native tandem promoters in E. coli

Open access
DOI
10.5061/dryad.bnzs7h4bs
2022

Single cell characterization of B-lymphoid differentiation and leukemic cell states during chemotherapy in ETV6-RUNX1-positive pediatric leukemia identifies drug-targetable transcription factor activities

Open access
DOI
10.6084/m9.figshare.c.5214813.v1
2020

Analyzing Th17 cell differentiation dynamics using a novel integrative modeling framework for time-course RNA sequencing data

Open access
DOI
10.6084/m9.figshare.c.3612158.v1
2015