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Computational Integration of TRPV4 Antagonists: 3D QSAR, Molecular Docking, Molecular Dynamics Simulations, ADME/Tox, and Retrosynthesis studies

Year of publication

2024

Authors

Abdelilah Toughzaoui; Oussama Chedadi; Abdellah El Aissouq; Youssef El Ouardi; Mohammed Bouachrine; kamal Moradi; Abdelkrim Ouammou

Abstract

TRPV4 antagonists that could be potential drugs for treatment and management of neuropathic pain. This study was conducted to systematically design several amino derivatives of 2,4'-dimethyl-[4,5'-bithiazol]-2-yl as antagonists. In silico computational methods, such as 3D quantitative structure-activity relationship modeling (3D-QSAR), molecular docking, and pharmacokinetic property assessment (ADMET), were used to discover new compounds with strong antagonistic activity. The best-performing 3D-QSAR model was developed using a partial least squares approach and comparative molecular similarity analysis (CoMSIA). The developed model demonstrated an excellent ability to correlate and predict properties (R2 = 0.932, Q2 = 0.620, and SEE = 0.109). It was observed that variations in biological activity were significantly influenced by interactions with steric, electrostatic, and hydrophobic fields. Molecular docking was used to validate the 3D-QSAR methods and to explain the binding site and interactions between the most active ligands and the receptor. Based on these results, a new series of compounds was predicted. The best-anchored molecules underwent MD simulation to confirm their dynamic behavior and stability, and they also underwent retrosynthetic analysis to assist in their synthesis.
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Organizations and authors

LUT University

El Ouardi Youssef

Publication type

Publication format

Article

Parent publication type

Journal

Article type

Original article

Audience

Scientific

Peer-reviewed

Peer-Reviewed

MINEDU's publication type classification code

A1 Journal article (refereed), original research

Publication channel information

Volume

9

Issue

42

Article number

202404026

​Publication forum

84507

​Publication forum level

1

Open access

Open access in the publisher’s service

No

Open access of publication channel

Partially open publication channel

Self-archived

No

Other information

Fields of science

Chemical engineering

Internationality of the publisher

International

International co-publication

Yes

Co-publication with a company

No

DOI

10.1002/slct.202404026

The publication is included in the Ministry of Education and Culture’s Publication data collection

Yes