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How to reach optimal estimates of confidence intervals in microscopic counting of phytoplankton?

Year of publication

2021

Authors

Salonen, Ari Heimo Kalevi; Salmi, Pauliina; Keskitalo, Jorma

Abstract

Present practices in the microscopic counting of phytoplankton to estimate the reliability of results rely on the assumption of a random distribution of taxa in sample preparations. In contrast to that and in agreement with the literature, we show that aggregated distribution is common and can lead to over-optimistic confidence intervals, if estimated according to the shortcut procedure of Lund et al. based on the number of counted cells. We found a good linear correlation between the distribution independent confidence intervals for medians and those for parametric statistics so that 95% confidence intervals can be approximated by using a correction factor of 1.4. Instead, the recommendation to estimate confidence intervals from the total number of counted cells according to Lund et al. should be categorically rejected. We further propose the adoption of real-time confidence intervals during microscopic counting as the criterion to define how long counting should be continued. Then each sample can be counted in its individual way to reach the necessary reliability independent of highly different samples. Such a dynamic counting strategy would be the most significant development in the quality control of phytoplankton counting since the early pioneers established the present counting practices in the late 1950s.
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Organizations and authors

University of Helsinki

Salonen Ari Heimo Kalevi

Keskitalo Jorma

Publication type

Publication format

Article

Parent publication type

Journal

Article type

Original article

Audience

Scientific

Peer-reviewed

Peer-Reviewed

MINEDU's publication type classification code

A1 Journal article (refereed), original research

Publication channel information

Parent publication name

Journal of Plankton Research

Volume

43

Issue

6

Pages

846–852

​Publication forum

61374

​Publication forum level

1

Open access

Open access in the publisher’s service

Yes

Open access of publication channel

Partially open publication channel

License of the publisher’s version

CC BY

Self-archived

Yes

License of the self-archived publication

CC BY

Other information

Fields of science

Statistics and probability; Environmental sciences; Ecology, evolutionary biology; Plant biology, microbiology, virology

Keywords

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Publication country

United Kingdom

Internationality of the publisher

International

Language

English

International co-publication

No

Co-publication with a company

No

DOI

10.1093/plankt/fbab062

The publication is included in the Ministry of Education and Culture’s Publication data collection

Yes